Detailed information of SNP:
|
SNP ID:
sf0208850395(Gbrowse)
Chromosome: chr02 Position: 8850395 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 50.99% | 49.01% |
| All Indica | 790 | 79.62% | 20.38% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 209 | 63.16% | 36.84% |
| Indica Intermediate | 208 | 76.92% | 23.08% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208850395 | T->C | INTERGENIC | None |