Detailed information of SNP:
|
SNP ID:
sf0208855382(Gbrowse)
Chromosome: chr02 Position: 8855382 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 65.61% | 34.39% |
| All Indica | 799 | 49.69% | 50.31% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 52.27% | 47.73% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208855382 | G->A | INTERGENIC | None |