Detailed information of SNP:
|
SNP ID:
sf0208872593(Gbrowse)
Chromosome: chr02 Position: 8872593 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.41% | 48.59% |
| All Indica | 798 | 25.56% | 74.44% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 12.53% | 87.47% |
| Indica II | 212 | 40.09% | 59.91% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208872593 | G->A | INTERGENIC | None |