Detailed information of SNP:
|
SNP ID:
sf0208883773(Gbrowse)
Chromosome: chr02 Position: 8883773 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 51.29% | 48.71% |
| All Indica | 783 | 24.01% | 75.99% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 63 | 11.11% | 88.89% |
| Indica I | 369 | 8.94% | 91.06% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 202 | 21.29% | 78.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208883773 | C->T | INTERGENIC | None |