Detailed information of SNP:
|
SNP ID:
sf0208883941(Gbrowse)
Chromosome: chr02 Position: 8883941 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 52.78% | 47.22% |
| All Indica | 783 | 26.95% | 73.05% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 367 | 13.62% | 86.38% |
| Indica II | 209 | 51.67% | 48.33% |
| Indica Intermediate | 207 | 25.60% | 74.40% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208883941 | A->G | INTERGENIC | None |