Detailed information of SNP:
|
SNP ID:
sf0208894188(Gbrowse)
Chromosome: chr02 Position: 8894188 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 55.45% | 44.55% |
| All Indica | 796 | 84.17% | 15.83% |
| All Japonica | 496 | 4.23% | 95.77% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 334 | 4.19% | 95.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208894188 | G->A | INTERGENIC | None |