Detailed information of SNP:
|
SNP ID:
sf0208895628(Gbrowse)
Chromosome: chr02 Position: 8895628 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 54.56% | 45.44% |
| All Indica | 795 | 84.40% | 15.60% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208895628 | G->A | INTERGENIC | None |