Detailed information of SNP:
|
SNP ID:
sf0208895718(Gbrowse)
Chromosome: chr02 Position: 8895718 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 54.53% | 45.47% |
| All Indica | 794 | 84.51% | 15.49% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208895718 | T->C | INTERGENIC | None |