Detailed information of SNP:
|
SNP ID:
sf0208973548(Gbrowse)
Chromosome: chr02 Position: 8973548 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1231 | 97.32% | 2.68% |
| All Indica | 633 | 95.73% | 4.27% |
| All Japonica | 491 | 100.00% | 0.00% |
| Aus | 60 | 96.67% | 3.33% |
| Indica I | 335 | 98.51% | 1.49% |
| Indica II | 129 | 88.37% | 11.63% |
| Indica Intermediate | 169 | 95.86% | 4.14% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 87.88% | 12.12% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208973548 | A->T | INTERGENIC | None |