Detailed information of SNP:
|
SNP ID:
sf0208987776(Gbrowse)
Chromosome: chr02 Position: 8987776 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 76.46% | 23.54% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 37.22% | 62.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 51.34% | 48.66% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208987776 | T->C | LOC_Os02g15880(LOC_Os02g15880.1) | INTRON |
| sf0208987776 | T->C | LOC_Os02g15880(LOC_Os02g15880.2) | INTRON |
| sf0208987776 | T->C | LOC_Os02g15880(LOC_Os02g15880.3) | INTRON |