Detailed information of SNP:
|
SNP ID:
sf0208995133(Gbrowse)
Chromosome: chr02 Position: 8995133 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 97.07% | 2.93% |
| All Indica | 749 | 95.06% | 4.94% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 358 | 93.58% | 6.42% |
| Indica II | 189 | 96.83% | 3.17% |
| Indica Intermediate | 202 | 96.04% | 3.96% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208995133 | G->A | INTERGENIC | None |