Detailed information of SNP:
|
SNP ID:
sf0208995144(Gbrowse)
Chromosome: chr02 Position: 8995144 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 78.95% | 21.05% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 490 | 43.06% | 56.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 56.53% | 43.47% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208995144 | C->T | INTERGENIC | None |