Detailed information of SNP:
|
SNP ID:
sf0209088881(Gbrowse)
Chromosome: chr02 Position: 9088881 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1309 | 88.08% | 11.92% |
| All Indica | 692 | 77.89% | 22.11% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 318 | 68.55% | 31.45% |
| Indica II | 202 | 98.02% | 1.98% |
| Indica Intermediate | 172 | 71.51% | 28.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209088881 | A->G | INTERGENIC | None |