Detailed information of SNP:
|
SNP ID:
sf0209100421(Gbrowse)
Chromosome: chr02 Position: 9100421 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1306 | 97.70% | 2.30% |
| All Indica | 783 | 99.36% | 0.64% |
| All Japonica | 447 | 96.87% | 3.13% |
| Aus | 27 | 74.07% | 25.93% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 199 | 99.50% | 0.50% |
| Temperate Japonica | 288 | 97.22% | 2.78% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209100421 | T->G | INTERGENIC | None |