Detailed information of SNP:
|
SNP ID:
sf0209114820(Gbrowse)
Chromosome: chr02 Position: 9114820 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1316 | 64.36% | 35.64% |
| All Indica | 698 | 39.26% | 60.74% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 291 | 58.76% | 41.24% |
| Indica II | 211 | 3.32% | 96.68% |
| Indica Intermediate | 196 | 48.98% | 51.02% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209114820 | C->T | INTERGENIC | None |