Detailed information of SNP:
|
SNP ID:
sf0209160074(Gbrowse)
Chromosome: chr02 Position: 9160074 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 74.42% | 25.58% |
| All Indica | 760 | 64.08% | 35.92% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 364 | 69.23% | 30.77% |
| Indica II | 199 | 56.28% | 43.72% |
| Indica Intermediate | 197 | 62.44% | 37.56% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209160074 | C->T | INTERGENIC | None |