Detailed information of SNP:
|
SNP ID:
sf0209189235(Gbrowse)
Chromosome: chr02 Position: 9189235 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 92.65% | 7.35% |
| All Indica | 758 | 94.59% | 5.41% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 365 | 96.99% | 3.01% |
| Indica II | 198 | 89.39% | 10.61% |
| Indica Intermediate | 195 | 95.38% | 4.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209189235 | T->C | INTERGENIC | None |