Detailed information of SNP:
|
SNP ID:
sf0209194356(Gbrowse)
Chromosome: chr02 Position: 9194356 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1222 | 65.71% | 34.29% |
| All Indica | 632 | 42.09% | 57.91% |
| All Japonica | 493 | 98.17% | 1.83% |
| Aus | 48 | 27.08% | 72.92% |
| Indica I | 285 | 36.14% | 63.86% |
| Indica II | 182 | 60.99% | 39.01% |
| Indica Intermediate | 165 | 31.52% | 68.48% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 74.29% | 25.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209194356 | T->C | LOC_Os02g16170(LOC_Os02g16170.1) | INTRON |