Detailed information of SNP:
|
SNP ID:
sf0209208487(Gbrowse)
Chromosome: chr02 Position: 9208487 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 94.82% | 5.18% |
| All Indica | 753 | 90.97% | 9.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 97.02% | 2.98% |
| Indica II | 191 | 83.25% | 16.75% |
| Indica Intermediate | 193 | 87.05% | 12.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209208487 | G->A | LOC_Os02g16200(LOC_Os02g16200.1) | INTRON |