Detailed information of SNP:
|
SNP ID:
sf0209213034(Gbrowse)
Chromosome: chr02 Position: 9213034 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 93.97% | 6.03% |
| All Indica | 775 | 90.06% | 9.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 358 | 85.47% | 14.53% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209213034 | A->G | LOC_Os02g16210(LOC_Os02g16210.1) | INTRON |