Detailed information of SNP:
|
SNP ID:
sf0209213126(Gbrowse)
Chromosome: chr02 Position: 9213126 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 93.94% | 6.06% |
| All Indica | 786 | 89.69% | 10.31% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 367 | 84.47% | 15.53% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209213126 | A->T | LOC_Os02g16210(LOC_Os02g16210.1) | INTRON |