Detailed information of SNP:
|
SNP ID:
sf0209215221(Gbrowse)
Chromosome: chr02 Position: 9215221 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 55.99% | 44.01% |
| All Indica | 782 | 89.90% | 10.10% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 364 | 85.71% | 14.29% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209215221 | G->A | INTERGENIC | None |