Detailed information of SNP:
|
SNP ID:
sf0209217729(Gbrowse)
Chromosome: chr02 Position: 9217729 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 54.62% | 45.38% |
| All Indica | 788 | 88.20% | 11.80% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 367 | 83.38% | 16.62% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209217729 | C->T | LOC_Os02g16220(LOC_Os02g16220.1) | Non-Synonymous SNP |