Detailed information of SNP:
|
SNP ID:
sf0209217876(Gbrowse)
Chromosome: chr02 Position: 9217876 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 90.17% | 9.83% |
| All Indica | 794 | 82.87% | 17.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 72.51% | 27.49% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209217876 | A->T | LOC_Os02g16220(LOC_Os02g16220.1) | INTRON |