Detailed information of SNP:
|
SNP ID:
sf0209217899(Gbrowse)
Chromosome: chr02 Position: 9217899 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 92.03% | 7.97% |
| All Indica | 790 | 86.96% | 13.04% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 371 | 83.02% | 16.98% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 206 | 82.04% | 17.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209217899 | A->G | LOC_Os02g16220(LOC_Os02g16220.1) | INTRON |