Detailed information of SNP:
|
SNP ID:
sf0209218988(Gbrowse)
Chromosome: chr02 Position: 9218988 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 64.32% | 35.68% |
| All Indica | 740 | 40.41% | 59.59% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 49 | 57.14% | 42.86% |
| Indica I | 340 | 55.00% | 45.00% |
| Indica II | 203 | 27.59% | 72.41% |
| Indica Intermediate | 197 | 28.43% | 71.57% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209218988 | A->G | LOC_Os02g16220(LOC_Os02g16220.1) | Synonymous |