Detailed information of SNP:
|
SNP ID:
sf0209219209(Gbrowse)
Chromosome: chr02 Position: 9219209 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 90.38% | 9.62% |
| All Indica | 784 | 83.16% | 16.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 73.91% | 26.09% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209219209 | C->T | LOC_Os02g16220(LOC_Os02g16220.1) | Non-Synonymous SNP |