Detailed information of SNP:
|
SNP ID:
sf0209233915(Gbrowse)
Chromosome: chr02 Position: 9233915 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 85.17% | 14.83% |
| All Indica | 780 | 76.28% | 23.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 366 | 79.78% | 20.22% |
| Indica II | 207 | 77.29% | 22.71% |
| Indica Intermediate | 207 | 69.08% | 30.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209233915 | T->A | INTERGENIC | None |