Detailed information of SNP:
|
SNP ID:
sf0209234212(Gbrowse)
Chromosome: chr02 Position: 9234212 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 90.95% | 9.05% |
| All Indica | 795 | 85.53% | 14.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 83.87% | 16.13% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209234212 | C->T | LOC_Os02g16240(LOC_Os02g16240.1) | INTRON |
| sf0209234212 | C->T | LOC_Os02g16240(LOC_Os02g16240.1) | SNPs that disrupt splice sites |