Detailed information of SNP:
|
SNP ID:
sf0209234493(Gbrowse)
Chromosome: chr02 Position: 9234493 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 89.63% | 10.37% |
| All Indica | 789 | 83.14% | 16.86% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 369 | 82.11% | 17.89% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 209 | 77.99% | 22.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209234493 | A->T | LOC_Os02g16240(LOC_Os02g16240.1) | INTRON |