Detailed information of SNP:
|
SNP ID:
sf0209236685(Gbrowse)
Chromosome: chr02 Position: 9236685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 82.67% | 17.33% |
| All Indica | 746 | 71.05% | 28.95% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 353 | 77.90% | 22.10% |
| Indica II | 202 | 68.81% | 31.19% |
| Indica Intermediate | 191 | 60.73% | 39.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209236685 | C->T | LOC_Os02g16240(LOC_Os02g16240.1) | Synonymous |