Detailed information of SNP:
|
SNP ID:
sf0209237131(Gbrowse)
Chromosome: chr02 Position: 9237131 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 95.60% | 4.40% |
| All Indica | 791 | 94.69% | 5.31% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 210 | 83.81% | 16.19% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209237131 | G->A | LOC_Os02g16240(LOC_Os02g16240.1) | Non-Synonymous SNP |