Detailed information of SNP:
|
SNP ID:
sf0209288012(Gbrowse)
Chromosome: chr02 Position: 9288012 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 98.72% | 1.28% |
| All Indica | 789 | 99.87% | 0.13% |
| All Japonica | 491 | 96.74% | 3.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 95.76% | 4.24% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209288012 | T->C | LOC_Os02g16330(LOC_Os02g16330.1) | INTRON |