Detailed information of SNP:
|
SNP ID:
sf0209349447(Gbrowse)
Chromosome: chr02 Position: 9349447 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 96.91% | 3.09% |
| All Indica | 784 | 96.43% | 3.57% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 55 | 76.36% | 23.64% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 201 | 88.06% | 11.94% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209349447 | A->G | LOC_Os02g16400(LOC_Os02g16400.1) | Synonymous |