Detailed information of SNP:
|
SNP ID:
sf0209427611(Gbrowse)
Chromosome: chr02 Position: 9427611 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1277 | 69.77% | 30.23% |
| All Indica | 677 | 55.69% | 44.31% |
| All Japonica | 496 | 90.52% | 9.48% |
| Aus | 53 | 49.06% | 50.94% |
| Indica I | 322 | 63.04% | 36.96% |
| Indica II | 180 | 40.56% | 59.44% |
| Indica Intermediate | 175 | 57.71% | 42.29% |
| Temperate Japonica | 334 | 86.83% | 13.17% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209427611 | A->G | LOC_Os02g16520(LOC_Os02g16520.1) | Non-Synonymous SNP |