Detailed information of SNP:
|
SNP ID:
sf0209435785(Gbrowse)
Chromosome: chr02 Position: 9435785 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1298 | 90.60% | 9.40% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 379 | 73.09% | 26.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 267 | 84.27% | 15.73% |
| Tropical Japonica | 68 | 36.76% | 63.24% |
| Japonica Intermediate | 44 | 61.36% | 38.64% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209435785 | G->A | INTERGENIC | None |