Detailed information of SNP:
|
SNP ID:
sf0209482696(Gbrowse)
Chromosome: chr02 Position: 9482696 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 71.10% | 28.90% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 493 | 30.02% | 69.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 332 | 40.36% | 59.64% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209482696 | C->T | LOC_Os02g16590(LOC_Os02g16590.1) | Non-Synonymous SNP |