Detailed information of SNP:
|
SNP ID:
sf0209656028(Gbrowse)
Chromosome: chr02 Position: 9656028 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 98.36% | 1.64% |
| All Indica | 793 | 99.37% | 0.63% |
| All Japonica | 488 | 96.52% | 3.48% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 95.12% | 4.88% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209656028 | C->T | LOC_Os02g16940(LOC_Os02g16940.1) | INTRON |