Detailed information of SNP:
|
SNP ID:
sf0209659961(Gbrowse)
Chromosome: chr02 Position: 9659961 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 73.58% | 26.42% |
| All Indica | 793 | 60.28% | 39.72% |
| All Japonica | 482 | 92.53% | 7.47% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 54.96% | 45.04% |
| Indica II | 210 | 59.52% | 40.48% |
| Indica Intermediate | 210 | 70.48% | 29.52% |
| Temperate Japonica | 324 | 91.36% | 8.64% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209659961 | C->T | INTERGENIC | None |