Detailed information of SNP:
|
SNP ID:
sf0209662257(Gbrowse)
Chromosome: chr02 Position: 9662257 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 74.36% | 25.64% |
| All Indica | 791 | 61.69% | 38.31% |
| All Japonica | 486 | 91.77% | 8.23% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 56.99% | 43.01% |
| Indica II | 209 | 61.72% | 38.28% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 326 | 91.41% | 8.59% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209662257 | G->A | INTERGENIC | None |