Detailed information of SNP:
|
SNP ID:
sf0209726554(Gbrowse)
Chromosome: chr02 Position: 9726554 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1315 | 93.08% | 6.92% |
| All Indica | 792 | 99.75% | 0.25% |
| All Japonica | 404 | 85.15% | 14.85% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 273 | 96.34% | 3.66% |
| Tropical Japonica | 77 | 59.74% | 40.26% |
| Japonica Intermediate | 54 | 64.81% | 35.19% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209726554 | C->A | INTERGENIC | None |