Detailed information of SNP:
|
SNP ID:
sf0209742250(Gbrowse)
Chromosome: chr02 Position: 9742250 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1307 | 62.66% | 37.34% |
| All Indica | 755 | 91.26% | 8.74% |
| All Japonica | 437 | 13.50% | 86.50% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 354 | 90.11% | 9.89% |
| Indica II | 201 | 94.53% | 5.47% |
| Indica Intermediate | 200 | 90.00% | 10.00% |
| Temperate Japonica | 289 | 11.42% | 88.58% |
| Tropical Japonica | 86 | 19.77% | 80.23% |
| Japonica Intermediate | 62 | 14.52% | 85.48% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 35 | 74.29% | 25.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209742250 | C->T | INTERGENIC | None |