Detailed information of SNP:
|
SNP ID:
sf0209814094(Gbrowse)
Chromosome: chr02 Position: 9814094 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 97.46% | 2.54% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209814094 | T->C | LOC_Os02g17140(LOC_Os02g17140.1) | Non-Synonymous SNP |