Detailed information of SNP:
|
SNP ID:
sf0209816313(Gbrowse)
Chromosome: chr02 Position: 9816313 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 98.30% | 1.70% |
| All Indica | 793 | 97.10% | 2.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209816313 | T->C | LOC_Os02g17140(LOC_Os02g17140.1) | INTRON |