Detailed information of SNP:
|
SNP ID:
sf0209825827(Gbrowse)
Chromosome: chr02 Position: 9825827 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 95.98% | 4.02% |
| All Indica | 769 | 95.97% | 4.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 50 | 62.00% | 38.00% |
| Indica I | 364 | 96.15% | 3.85% |
| Indica II | 201 | 98.51% | 1.49% |
| Indica Intermediate | 204 | 93.14% | 6.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209825827 | A->G | INTERGENIC | None |