Detailed information of SNP:



SNP ID: sf0209830495(Gbrowse)

Chromosome: chr02

Position: 9830495
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1416 98.94% 1.06%
All Indica799 100.00% 0.00%
All Japonica494 97.37% 2.63%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica333 96.10% 3.90%
Tropical Japonica93 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0209830495 T->C INTERGENIC None