Detailed information of SNP:
|
SNP ID:
sf0209835680(Gbrowse)
Chromosome: chr02 Position: 9835680 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 88.66% | 11.34% |
| All Indica | 785 | 93.63% | 6.37% |
| All Japonica | 496 | 82.06% | 17.94% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 367 | 93.46% | 6.54% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 334 | 82.63% | 17.37% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209835680 | T->C | INTERGENIC | None |