Detailed information of SNP:
|
SNP ID:
sf0209885620(Gbrowse)
Chromosome: chr02 Position: 9885620 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.33% | 13.67% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 65.79% | 34.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 50.15% | 49.85% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209885620 | C->T | LOC_Os02g17240(LOC_Os02g17240.1) | UTR_5_PRIME |