Detailed information of SNP:
|
SNP ID:
sf0209944297(Gbrowse)
Chromosome: chr02 Position: 9944297 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.24% | 17.76% |
| All Indica | 799 | 77.22% | 22.78% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0209944297 | C->A | INTERGENIC | None |