Detailed information of SNP:
|
SNP ID:
sf0210038511(Gbrowse)
Chromosome: chr02 Position: 10038511 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 93.16% | 6.84% |
| All Indica | 741 | 88.66% | 11.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 86.05% | 13.95% |
| Indica II | 197 | 87.82% | 12.18% |
| Indica Intermediate | 200 | 94.00% | 6.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210038511 | C->T | LOC_Os02g17440(LOC_Os02g17440.1) | INTRON |